The projects conducted under BCBI include:

PATIKA	Pathway Analysis Tool for Integration and Knowledge Acquisition
PVS	Pathway Visualization Services
ChiBE	Chisio BioPAX Editor
	Medical Image Analysis for Automated Diagnosis and Grading of Colon Cancer

BCBI is also involved in community projects such as BioPAX (Biological Pathways Exchange) and SBGN (Systems Biology Graphical Notation).